FastQCFastQC Report
Sat 10 Sep 2022
EGAF00002538449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15911805
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG525519233.02700102219704No Hit
CACGGTGC465104329.230140766556655No Hit
TTTCCACT311317219.565171895960262No Hit
AGATACAA221331813.90991154051976No Hit
CCCGGTGC1933161.214921877184895No Hit
TTTCCCCT799060.5021806137015883No Hit
GCGAGGTG498930.31355964958092436No Hit
GCGATGGG258270.16231345218220058No Hit
GGGATGTG200300.12588138177912564No Hit
GCGTTGTG188610.11853463513410327No Hit
CGCGGTGC181850.11428621705708433No Hit
CTCGGTGC167330.10516091669046976No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)