FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53784627
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC1417902826.36260357443773No Hit
GGCTGTTG1377579725.612889348474983No Hit
TATGAGCT1252075923.279438193370755No Hit
ATACCCAA1121923620.859558996290893No Hit
TATGCGCT3400420.6322289824562695No Hit
GGCGGTTG1398500.2600185365234568No Hit
GGCTGGTG1198610.22285364180363285No Hit
GGGTGTTG1170600.2176458340038316No Hit
ATACCCCA969420.18024109379804754No Hit
CCGATTGC833590.15498666561357766No Hit
CCGCTAGC785220.14599338952373883No Hit
TTTGAGCT604120.11232205812266764No Hit
CCGATCGC599750.111509558298136No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)