FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53907187
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC1423363726.403969103414727No Hit
GGCTGTTG1388429025.75591636788616No Hit
TATGAGCT1267581523.514146638740396No Hit
ATACCCAA1127636620.918112458733933No Hit
TATGCGCT3015850.5594523045693333No Hit
GGCGGTTG1235430.22917723382598318No Hit
GGCTGGTG1043740.19361796786020388No Hit
GGGTGTTG945400.1753755023425726No Hit
ATACCCCA795040.14748311760359523No Hit
CCGCTAGC707710.13128305136752916No Hit
CCGATTGC696980.12929259321210732No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)