FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53967344
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC1426435126.431448988855188No Hit
GGCTGTTG1395257325.853732953765522No Hit
TATGAGCT1279572523.710125515904583No Hit
ATACCCAA1129282120.92528585434925No Hit
TATGCGCT2658060.49253118700820264No Hit
GGCGGTTG1029930.1908431884289136No Hit
GGGTGTTG887610.16447168495081027No Hit
GGCTGGTG851070.15770092372898692No Hit
ATACCCCA778180.1441946077613158No Hit
CCGCTAGC650080.12045803106411908No Hit
CCGATTGC572140.10601596402446635No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)