FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002538467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19992417
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG707178835.37235142704356No Hit
AATCTCTC607599130.391477928856723No Hit
CGGAGGGA453446322.680914468720815No Hit
TCAGAAAT19623659.815546564479922No Hit
GTCTCTCA270590.13534631655592216No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)