FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15543902
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG624855540.199397808864205No Hit
TTGGCATA401287225.816374807303855No Hit
CCACTTAT268495017.27333329816413No Hit
GGTAACGC238838915.365440415154444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)