FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15473690
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG622530840.231567260297965No Hit
TTGGCATA398088925.726824047786923No Hit
CCACTTAT267016017.256129598046748No Hit
GGTAACGC236968615.314291549074591No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)