FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49241110
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC1289813626.193836816432448No Hit
GGCTGTTG1264377725.67727859912175No Hit
TATGAGCT1159552423.548461844178572No Hit
ATACCCAA1025039620.8167443828947No Hit
TATGCGCT3007600.6107904553735689No Hit
GGCGGTTG1235460.25090011171559695No Hit
GGCTGGTG1057800.21482050262473773No Hit
GGGTGTTG991810.20141909879773223No Hit
ATACCCCA820170.16656204541286743No Hit
CCGCTAGC745500.15139788684698618No Hit
CCGATTGC631090.12816323596279613No Hit
CCGATCGC567390.11522689070169213No Hit
TTTGAGCT513580.10429902981472189No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)