FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38748229
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT1147244729.607668004646097No Hit
ATATCCCG1088049028.079967216050054No Hit
GAGCAAGA1048901327.06965781584495No Hit
CGCAGTTC475892112.281647762533868No Hit
GAGCAAGC1234270.3185358484383893No Hit
GCGCAAGA878150.22662971254763667No Hit
TTATCCCG690310.17815265828020166No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)