FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39122271
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT1162227029.707554553773218No Hit
ATATCCCG1103917428.217109379974385No Hit
GAGCAAGA1063314227.179255519190082No Hit
CGCAGTTC479542712.25753740113911No Hit
GAGCAAGC1065510.2723538211777123No Hit
GCGCAAGA853540.21817240619799397No Hit
TTATCCCG587730.15022900894480282No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)