FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36428110
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT1080378729.657830175652812No Hit
ATATCCCG1021646728.045558773156227No Hit
GAGCAAGA982059426.958834811907618No Hit
CGCAGTTC444994712.215695516456934No Hit
GAGCAAGC1169490.32104053710170527No Hit
GCGCAAGA913450.25075415661147393No Hit
TTATCCCG607050.16664328728556052No Hit
ATCTCCCG377530.10363699900983059No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)