FastQCFastQC Report
Thu 5 Jan 2023
EGAF00002538498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179230552
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA5251852229.30221517144019No Hit
CCAAGATG4847116227.044028743492348No Hit
GTTTATCT3938980721.977172173190652No Hit
TACGTGAC3541398519.758899699198608RNA PCR Primer, Index 17 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)