FastQCFastQC Report
Sat 10 Sep 2022
EGAF00002538513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16417183
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCTGT550119133.50873898402668No Hit
CCTAGACC427816126.05904435614807No Hit
TAGCTCTA405777124.716609420751418No Hit
GGAGAGAG220124413.4081711825957No Hit
CCTAGCCC1110850.6766386169905032No Hit
CCTAGACA223690.1362535826030568No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)