FastQCFastQC Report
Sat 10 Sep 2022
EGAF00002538516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16240019
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCTGT543454033.46387710506989No Hit
CCTAGACC422000825.985240534509224No Hit
TAGCTCTA401701324.735272785087258No Hit
GGAGAGAG217278713.379214642544445No Hit
CCTAGCCC1139260.7015139575883501No Hit
CCTAGACA228580.14075106685527894No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)