FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14523411
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCCGT444820230.627804997049246No Hit
CAGAGGCC422826429.11343623064857No Hit
GGTCAATA355681524.490217897159283No Hit
ATCTTTAG204641414.090450239272304No Hit
CAGCGGCC260820.1795859113262029No Hit
TCCGCCGT193080.13294397576437106No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)