FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8100433
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA255818931.58089203379622No Hit
TCCGGAAG198201124.467963626141962No Hit
AGTTCGGC168679020.823454746184556No Hit
GTAATCTT161271419.908985112277332No Hit
CAGCATCC305010.37653542718025074No Hit
AGTTCGGG207440.25608507594594015No Hit
TCCGGATG117080.14453548347353776No Hit
CCGCATCA95060.11735175144341049No Hit
GCCGGAAG89970.1110681367279996No Hit
GGAATCTT81820.10100694617188984No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)