FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14679786
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCCGT448992430.58575922019572No Hit
CAGAGGCC426255229.036881055350534No Hit
GGTCAATA359517224.49062949555259No Hit
ATCTTTAG206421014.061581006698598No Hit
CAGCGGCC315950.21522793315924363No Hit
TCCGCCGT236570.1611535753995324No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)