FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14705539
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC541949436.85341965364207No Hit
CATCACTT434455429.54365698530329No Hit
ACAATTCA334458222.74368861964189No Hit
GTGTGGAG13508499.185987674440224No Hit
CATCACTA226660.15413239868324446No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)