FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14678032
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC540612136.83137494181781No Hit
CATCACTT432983229.498722989566993No Hit
ACAATTCA333434722.716580805928206No Hit
GTGTGGAG13378739.11479822363107No Hit
CATCACTA241600.16459972290563202No Hit
TGCGCCGC158090.10770517464466627No Hit
CATCCCTT149620.10193464627955573No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)