FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14832811
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC543684836.65419858717272No Hit
CATCACTT438329829.551364201970888No Hit
ACAATTCA338025022.789004727424896No Hit
GTGTGGAG13614249.178462531478356No Hit
CATCACTA242150.16325293971587718No Hit
CATCCCTT169360.11417930154978716No Hit
TGCGCCGC166130.11200169677885062No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)