FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10362373
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA311234230.03503155117076No Hit
AGTTCGGC256950624.796501727934324No Hit
TCCGGAAG239440723.10674398615066No Hit
GTAATCTT193734218.695929976656892No Hit
CAGCATCC350230.3379824293142121No Hit
AGTTCGGG313760.30278778808676354No Hit
TCCGGATG181020.17468971634200003No Hit
GCCGGAAG124270.11992426831190116No Hit
GGAATCTT114320.11032222059561068No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)