FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9824501
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA298340930.367028310140125No Hit
TCCGGAAG232154823.63018742631305No Hit
AGTTCGGC231457723.559232168636353No Hit
GTAATCTT186398418.972810934621513No Hit
CAGCATCC331570.33749296783622906No Hit
AGTTCGGG291320.29652396595002634No Hit
TCCGGATG175950.17909306538825737No Hit
GCCGGAAG124230.1264491702937381No Hit
CCGCATCA109020.11096746796605751No Hit
GGAATCTT108550.11048907216763476No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)