Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00002538582 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9560946 |
Sequences flagged as poor quality | 0 |
Sequence length | 8 |
%GC | 54 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGACACGT | 2816666 | 29.460118276998948 | No Hit |
CCTGTGCG | 2622885 | 27.433320928703083 | No Hit |
TACTCTTC | 2159093 | 22.582420191474778 | No Hit |
ATGAGAAA | 1498051 | 15.668439085421046 | No Hit |
GGCCACGT | 76630 | 0.801489727062573 | TruSeq Adapter, Index 20 (100% over 8bp) |
GGACCCGT | 38482 | 0.4024915526141451 | No Hit |
CCGGTGCG | 30231 | 0.3161925608616553 | No Hit |
CCTGGGCG | 24717 | 0.2585204434791285 | No Hit |
TACTCGTC | 18316 | 0.19157100144692796 | No Hit |
TACTGTTC | 17865 | 0.1868538950016034 | No Hit |
ATGAGAAC | 13909 | 0.1454772362483796 | No Hit |
GGACACGG | 13037 | 0.13635679983968113 | No Hit |
CGTGTGCG | 12742 | 0.13327133110049988 | No Hit |
TACGCTTC | 9943 | 0.1039959853345056 | No Hit |
CCTGTGGG | 9802 | 0.10252123586933762 | No Hit |
Adapter Content
Can't analyse adapters as read length is too short (12 vs 0)