FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14687676
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC538525436.665119791585816No Hit
CATCACTT433447729.510979136522348No Hit
ACAATTCA334133822.749262715217846No Hit
GTGTGGAG13376759.10746533352179No Hit
CATCACTA245140.16690182980615859No Hit
CATCCCTT185620.12637806008248No Hit
TGCGCCGC185270.12613976506562372No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)