FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7495355
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT236975431.616301029104026No Hit
CCAGGGCA222224429.648282169423595No Hit
AATAATGG172182422.971880584708796No Hit
GTGTCATC107544514.348152956064123No Hit
AATAATGA82230.10970794578775789No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)