FastQCFastQC Report
Wed 8 May 2024
EGAF00002538601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8057609
Total Bases64.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT324323240.250550752710886No Hit
TTACTCAG169620821.051009052437266No Hit
CGTTAATC168914820.96339000812772No Hit
AAGGGTGA130601516.20846829375811No Hit
GCCCCGCT301060.373634411895638No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)