FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8142741
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT326898640.14601471420987No Hit
TTACTCAG171179021.022282300272106No Hit
CGTTAATC170639320.95600240754311No Hit
AAGGGTGA131809016.18730105746947No Hit
GCCCCGCT355220.43624130989798154No Hit
GCCACGCA81430.10000318074712188No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)