FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8323074
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT334991540.24853077120304No Hit
TTACTCAG174704420.990369663900623No Hit
CGTTAATC174265720.937660772930773No Hit
AAGGGTGA134509616.16104818964724No Hit
GCCCCGCT367800.44190403689790575No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)