Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00002538631 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10399987 |
Total Bases | 83.1 Mbp |
Sequences flagged as poor quality | 0 |
Sequence length | 8 |
%GC | 54 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGACACGT | 2925852 | 28.13322747422665 | No Hit |
CCTGTGCG | 2865348 | 27.55145751624497 | No Hit |
TACTCTTC | 2396089 | 23.03934610687494 | No Hit |
ATGAGAAA | 1599132 | 15.376288451129794 | No Hit |
GGACCCGT | 156025 | 1.5002422599182097 | No Hit |
GGCCACGT | 71264 | 0.6852316257703014 | TruSeq Adapter, Index 20 (100% over 8bp) |
CCGGTGCG | 25679 | 0.24691377018067426 | No Hit |
CCTGGGCG | 25521 | 0.24539453751240267 | No Hit |
CGTGTGCG | 17659 | 0.1697982891709384 | No Hit |
CCTGTGGG | 15607 | 0.1500674952766768 | No Hit |
TTCTCTTC | 15259 | 0.1467213372478254 | No Hit |
GGACACGG | 13423 | 0.12906746902664398 | No Hit |
TTGAGAAA | 11600 | 0.11153860096171272 | No Hit |
TCCTCTTC | 11395 | 0.10956744465161351 | No Hit |
TACTCGTC | 11254 | 0.10821167372613062 | No Hit |
Adapter Content
Can't analyse adapters as read length is too short (12 vs 0)