FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8243643
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT330681540.113515347522934No Hit
TTACTCAG172985520.984108603441463No Hit
CGTTAATC172643520.942622090743136No Hit
AAGGGTGA133340216.174911989759867No Hit
GCCCCGCT394720.4788174354469256No Hit
GCCACGCA82840.10048955298039956No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)