FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13384211
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT422763831.586755468813216No Hit
CTGGACTC387668528.964613603297195No Hit
AAACCTCA303223322.655298844287497No Hit
TGTAGAAG206195015.405839014343096No Hit
CTGGCCTC334800.2501454885909973No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)