FastQCFastQC Report
Wed 8 May 2024
EGAF00002538645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13578291
Total Bases108.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT428461231.55486946037613No Hit
CTGGACTC392106728.877470662545086No Hit
AAACCTCA306518322.574144271911685No Hit
TGTAGAAG208643415.365954375259744No Hit
CTGGCCTC425640.31347096626519494No Hit
AACCCTCA168300.1239478517583693No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)