FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002538648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24422260
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGGA677398027.736908869203752No Hit
GCTGAATT661539727.08757092914415No Hit
ATGCTCCG550399522.536796348904648No Hit
TGAAGTAC507933220.79796054910561No Hit
CACTCGAA308070.1261431169760702RNA PCR Primer, Index 47 (100% over 8bp)
GCTGAATA256140.10487972857548811No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)