FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8271648
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT258074731.199913245824774No Hit
TGTGCGGG218994726.47534082688238No Hit
ACCATAAC181313621.919888273775673No Hit
GTGTATTA108864813.16119834886591No Hit
CACCGCCT902281.0908104406763925No Hit
GGTGCGGG621920.7518695186255508No Hit
TGGGCGGG455510.550688327162858No Hit
ACCATACC442590.535068706985597No Hit
CCCATAAC334010.40380103215223856No Hit
TGTGGGGG296250.35815112055058435No Hit
CAACGCCG233010.28169719020925454No Hit
GGGTATTA213550.2581710440289529No Hit
CAACGCGT169390.20478385927447587No Hit
CCACGCCT140320.1696397138756388No Hit
ACCCTAAC121980.1474675904970811No Hit
CAACGCCA99310.12006071825106679No Hit
CAACGGCT99260.12000027080456034No Hit
TGTGCGGA89740.10849107698973652No Hit
TGCGCGGG87410.10567422598253698No Hit
GTGTATTT84670.10236170591398475No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)