FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6791913
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT209782130.887041692082924No Hit
TGTGCGGG178295926.251204925622574No Hit
ACCATAAC148593421.87798930875587No Hit
GTGTATTA90737613.359652869522916No Hit
CACCGCCT791961.1660337816459074No Hit
GGTGCGGG508010.747963055474945No Hit
ACCATACC386810.5695155400253213No Hit
TGGGCGGG386690.5693388593169553No Hit
CCCATAAC280600.41313838972907924No Hit
TGTGGGGG252010.37104421096088835No Hit
CAACGCCG210650.3101482601440861No Hit
GGGTATTA169760.2499443087683838No Hit
CAACGCGT146570.21580076187666125No Hit
CCACGCCT132120.1945254599109264No Hit
ACCCTAAC120000.17668070836596406No Hit
CAACGGCT82430.12136492325505348No Hit
CAACGCCA77390.11394433350368298No Hit
TGTGCGGA72660.10698016891559123No Hit
GTGTATTT71220.10486000041519966No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)