FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10091656
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT321023231.810755340847923No Hit
TGTGCGGG272780427.030291163313535No Hit
ACCATAAC227662422.559468931560886No Hit
GTGTATTA135541113.431006764400214No Hit
CACCGCCT729460.7228347854901118No Hit
GGTGCGGG483750.47935641088043435No Hit
TGGGCGGG348640.34547352783329116No Hit
ACCATACC334710.3316700450352251No Hit
CCCATAAC290260.2876237557047129No Hit
TGTGGGGG246880.24463774825459766No Hit
CAACGCCG194920.19314966740840156No Hit
GGGTATTA171130.16957573662835912No Hit
CAACGCGT146520.14518925337922736No Hit
CAACGCCA120200.11910830095675082No Hit
CCACGCCT117710.11664091602012594No Hit
TGTGCGGA116070.1150158110819473No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)