FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8933747
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT280861031.438208402364655No Hit
TGTGCGGG237313426.563702777793015No Hit
ACCATAAC199965722.383183674218667No Hit
GTGTATTA119131013.334942214056431No Hit
CACCGCCT789080.883257607362286No Hit
GGTGCGGG519460.5814581496431452No Hit
TGGGCGGG411450.46055703166879475No Hit
ACCATACC382870.4285659757322431No Hit
CCCATAAC281190.31475035055279715No Hit
TGTGGGGG277880.311045298238242No Hit
CAACGCCG220040.246302027581484No Hit
GGGTATTA190540.21328116858469354No Hit
CAACGCGT172860.1934910402096679No Hit
CCACGCCT136970.15331752734882687No Hit
ACCCTAAC110790.12401291417811586No Hit
CAACGCCA107030.11980415384496561No Hit
CAACGGCT102030.11420739808279774No Hit
TGTGCGGA97180.10877854499349489No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)