FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101035361
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC3001528229.707700059586067No Hit
TTTGGGTA2463338824.380957078977527No Hit
ACATTACT2443268224.18230781597346No Hit
GGCAATGG1998820919.78337960310747No Hit
CAGCCCCC1275330.12622610414585445No Hit
ACATTACA1115700.11042668516817591No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)