FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99930125
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC2956101729.581687203933747No Hit
TTTGGGTA2442793524.445015954898487No Hit
ACATTACT2419960624.21652729844979No Hit
GGCAATGG1966770519.68145741837109No Hit
CAGCCCCC1227620.1228478399281498No Hit
ACATTACA1129080.11298694963105471No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)