FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101263064
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC2984298029.470745621522966No Hit
TTTGGGTA2483253024.522791449407457No Hit
ACATTACT2462142724.314321557562195No Hit
GGCAATGG1991936419.67090784454241No Hit
CAGCCCCC1409710.13921265507036207No Hit
ACATTACA1144160.11298887815600761No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)