FastQCFastQC Report
Wed 8 May 2024
EGAF00002538692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100307480
Total Bases802.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC2956446829.47384183113762No Hit
TTTGGGTA2459818724.52278434270306No Hit
ACATTACT2436912624.29442550047115No Hit
GGCAATGG1965270619.592463094477104No Hit
CAGCCCCC1487990.14834287532694473No Hit
ACATTACA1178570.11749572414739161No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)