FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8891478
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT280490531.545992690978935No Hit
TGTGCGGG237544226.7159408143393No Hit
ACCATAAC198691722.34630732933265No Hit
GTGTATTA119445113.433660860432878No Hit
CACCGCCT758630.8532102311899101No Hit
GGTGCGGG492110.5534625401986036No Hit
TGGGCGGG361970.40709767262540597No Hit
ACCATACC355650.39998974298761125No Hit
CCCATAAC306500.3447120939848246No Hit
TGTGGGGG247720.2786038496636892No Hit
CAACGCCG211280.23762078700526507No Hit
GGGTATTA172440.19393851056033654No Hit
CAACGCGT155640.17504401405480619No Hit
CCACGCCT129950.14615117981509937No Hit
CAACGCCA105800.11899034108839948No Hit
ACCCTAAC103130.1159874657509134No Hit
TGTGCGGA99300.11167997041661691No Hit
CAACGGCT91910.10336864129900562No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)