FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48505120
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTAGA1443723629.764354773269297No Hit
TTCCCGAC1316144827.134141715348814No Hit
AGTAGTCT1169856224.11820030545229No Hit
CAGTACTG876620418.07273953759933No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)