FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002538725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59555075
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGCCG1719713528.876019382059383No Hit
CCCACAGT1701479528.569849001113674No Hit
TATGATTC1282060721.527312323928733No Hit
ATGCTGAA1185326919.90303765044373No Hit
TATGCTTC858740.14419258140469138No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)