FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14340645
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC576403040.193659350747474No Hit
CATCACTT350758124.459018405378558No Hit
ACAATTCA315990222.03458770508579No Hit
GTGTGGAG152394110.626725645882734No Hit
TGCGCCGC705360.4918607217457792No Hit
ACAATTCC342820.23905479844177163No Hit
CATCCCTT196480.13700917915477304No Hit
CATCACTA168320.11737268442249287No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)