FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14014935
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC560793140.01396367517937No Hit
CATCACTT343674824.522040237789184No Hit
ACAATTCA309578822.08920697812726No Hit
GTGTGGAG149625310.67613228316792No Hit
TGCGCCGC667840.47652022645841735No Hit
ACAATTCC320230.2284919623244774No Hit
CATCCCTT194510.13878765759527248No Hit
CATCACTA168590.12029310160910486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)