FastQCFastQC Report
Wed 8 May 2024
EGAF00002538734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13469639
Total Bases107.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC535767639.775943512665776No Hit
CATCACTT329312224.44848002236734No Hit
ACAATTCA297843022.112173904586456No Hit
GTGTGGAG143358710.64309889819616No Hit
TGCGCCGC728890.5411355122434981No Hit
ACAATTCC372780.27675574675757825No Hit
CATCCCTT240240.17835667310757178No Hit
CATCACTA162400.12056744802143547No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)