FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13421093
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC533279639.73443891641314No Hit
CATCACTT329424324.54526617168959No Hit
ACAATTCA297482322.165281173448392No Hit
GTGTGGAG143406710.68517295871506No Hit
TGCGCCGC675230.5031110357405317No Hit
ACAATTCC323320.2409043734366493No Hit
CATCCCTT222360.16567950166204795No Hit
CATCACTA167590.12487060480096517No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)