FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12225844
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC488684739.971449005892765No Hit
CATCACTT298455924.41188518355052No Hit
ACAATTCA265801121.740920299653748No Hit
GTGTGGAG129268210.573355917186577No Hit
TGCGCCGC857170.7011131501432539No Hit
ACAATTCC410390.3356741669532181No Hit
CATCCCTT274410.22445076184515358No Hit
CATCACTA145310.11885478008716616No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)