FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12515763
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC500384039.98030323840424No Hit
CATCACTT303893024.280820913595118No Hit
ACAATTCA270228421.591044828829055No Hit
GTGTGGAG131459210.50349067811527No Hit
TGCGCCGC984120.786304438650684No Hit
ACAATTCC481370.3846109901569725No Hit
CATCCCTT312850.2499647844082698No Hit
CATCACTA154160.12317267433076193No Hit
TGCGCGGC128260.10247877017166272No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)